CellML tools

The CellML team is committed to providing freely available tools for creating, editing, and using CellML models. Within this part of the website we provide information regarding tools we are developing internally and links to external projects developing tools which utilise the CellML format.

Please let us know if you have an open source CellML tool looking for a home on the internet, as we are able to offer limited hosting services on cellml.org.

The cellml-tools-developers mailing list is used for discussion of tools being developed for the CellML language and we welcome additions and corrections to the tools listed below. 

Modelling environments

Environments that support modelling with CellML in some way. These tools may import, export, or otherwise enable the use of CellML.

Visualisation and annotation tools

Tools designed for visualising CellML models and annotating them with metadata such as terms from ontologies and constrained vocabularies.

Simulation tools

Tools for running simulations of CellML models.

Validation tools

Here you will find tools for validating CellML files against the specifications.

Translation utilities

Small tools such as XSLT converters and code generators.

CellML API

The CellML API.

 

 

Getting started

If you're just getting started with CellML, you'll want to download one of the complete CellML environments, and then have a look at some of the basic tutorials we have on offer.

Developing for CellML

If you're interested in developing software for the CellML project, the CellML API provides a powerful platform for processing CellML, along with a range of essential utilities such as code generation, validation etc.

Featured software

OpenCell is a complete environment for working with CellML models. It allows users to construct, edit and simulate models. Notably, it supports CellML 1.1 and the use of CellML imports.

 

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