 | | | | |
| | | | | | | | | | | | | Working Draft - 2 November 2001 | |
<?xml version="1.0" encoding="iso-8859-1"?>">
<!--This Version:
Title: RDF Schema Declaration Draft for CellML Metadata terms.
Creator: Autumn A. Cuellar
Bioengineering Research Group, The University of Auckland
Date Created: 2001-11-02
Comments: This is a premilinary version to be used only as a model and will
almost certainly change.
Comments may be sent to cellml-discussion@cellml.org.-->
<!DOCTYPE rdf:RDF [
<!ENTITY rdfns http://www.w3.org/1999/02/22-rdf-syntax-ns#>
<!ENTITY rdfsns http://www.w3.org/2000/01/rdf-schema#>
<!ENTITY dcns http://purl.org/dc/elements/1.1/>
<!ENTITY dcqns http://purl.org/dc/terms/>
<!ENTITY cmetans http://www.cellml.org/metadata/1.0#>
]>
<rdf:RDF
xmlns:cmeta="&cmetans;"
xmlns:dc="&dcns;"
xmlns:dcq="&dcqns;"
xmlns:rdf="&rdfns;"
xmlns:rdfs="&rdfns;">
<!--Description of this Schema-->
<rdf:Description rdf:about="&cmetans;">
<dc:title>The CellML Metadata Element Set Vocabulary</dc:title>
<dc:creator>Autumn A. Cuellar</dc:creator>
<dcq:created>
<dcq:W3CDTF>2001-11-02</dcq:W3CDTF>
</dcq:created>
<dcq:RFC1766>en-uk</dcq:RFC1766>
<dc:description>
The CellML Metadata Element Set Vocabulary is intended to enable searches
of a CellML model repository of biological models.
</dc:description>
</rdf:Description>
<!--Sex-->
<rdf:Property rdf:about="&cmetans;sex">
<rdfs:label>Sex</rdfs:label>
<rdfs:comment>The sex for which a CellML element is relevant.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&cmetans;" />
</rdf:Property>
<!--Biological Entity-->
<rdf:Property rdf:about="&cmetans;bio_entity">
<rdfs:label>Biological Entity</rdfs:label>
<rdfs:comment>
A name or database unique identifier for a biological entity.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&cmetans;" />
</rdf:Property>
<!--Alternative Database Identifier-->
<rdf:Property rdf:about="&cmetans;alternative">
<rdfs:label>Alternative Database Identifier</rdfs:label>
<rdfs:comment>
An alternative database unique identifier for a biological entity.
</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="&cmetans;bio_entity" />
<rdfs:isDefinedBy rdf:resource="&cmetans;" />
</rdf:Property>
<!--Mathematical Problem Type: GAMS classification tree-->
<rdf:Property rdf:about="&cmetans;alternative">
<rdfs:label>Mathematical Problem Type: GAMS classification tree</rdfs:label>
<rdfs:comment>
A classification of the type of problem encoded in the math associated
with the CellML model or model component.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&cmetans;" />
<rdfs:seeAlso rdf:resource="http://gams.nist.gov" />
</rdf:Property>
<!--Annotation-->
<rdf:Property rdf:about="&cmetans;annotation">
<rdfs:label>Annotation</rdfs:label>
<rdfs:comment>
An annotation that describes the CellML model or model component.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&cmetans;" />
</rdf:Property>
<!--Annotation:coment-->
<rdf:Property rdf:about="&cmetans;comment">
<rdfs:label>Comment</rdfs:label>
<rdfs:comment>
A free-form comment of the person who coded the model into CellML.
</rdfs:comment>
<rdf:type rdf:resource="&cmetans;annotation" />
<rdfs:isDefinedBy rdf:resource="&cmetans;" />
</rdf:Property>
<!--Annotation:limitation-->
<rdf:Property rdf:about="&cmetans;limitation">
<rdfs:label>Limitation</rdfs:label>
<rdfs:comment>
A description of the limitations/scope of the content of the CellML
element.
</rdfs:comment>
<rdf:type rdf:resource="&cmetans;annotation" />
<rdfs:isDefinedBy rdf:resource="&cmetans;" />
</rdf:Property>
<!--Annotation:modification-->
<rdf:Property rdf:about="&cmetans;modification">
<rdfs:label>Modification</rdfs:label>
<rdfs:comment>
A description of a change made to the content of the CellML element.
</rdfs:comment>
<rdf:type rdf:resource="&cmetans;annotation" />
<rdfs:isDefinedBy rdf:resource="&cmetans;" />
</rdf:Property>
<!--Annotation:validation-->
<rdf:Property rdf:about="&cmetans;validation">
<rdfs:label>Validation</rdfs:label>
<rdfs:comment>
A description of the level of the content of the CellML element.
</rdfs:comment>
<rdf:type rdf:resource="&cmetans;annotation" />
<rdfs:isDefinedBy rdf:resource="&cmetans;" />
</rdf:Property>
</rdf:RDF>
<?xml version="1.0" encoding="iso-8859-1"?>
<!--This Version:
Title: RDF Schema Declaration Draft for Bibliographic Query Service terms.
Creator: Autumn A. Cuellar
Bioengineering Research Group, The University of Auckland
Date Created: 2001-11-02
Comments: This is a premilinary version to be used only as a model and will
almost certainly change (constraints need to be added, etc.).
Comments may be sent to cellml-discussion@cellml.org.-->
<!DOCTYPE rdf:RDF [
<!ENTITY rdfns http://www.w3.org/1999/02/22-rdf-syntax-ns#>
<!ENTITY rdfsns http://www.w3.org/2000/01/rdf-schema#>
<!ENTITY dcns http://purl.org/dc/elements/1.1/>
<!ENTITY dcqns http://purl.org/dc/terms/>
<!ENTITY bqsns http://www.cellml.org/bqs/1.0#>
]>
<rdf:RDF
xmlns:bqsns="&bqs;"
xmlns:dc="&dcns;"
xmlns:dcq="&dcqns;"
xmlns:rdf="&rdfns;"
xmlns:rdfs="&rdfns;">
<!--Description of this Schema-->
<rdf:Description rdf:about="&bqsns;">
<dc:title>The Bibliographic Query Service Element Set Vocabulary</dc:title>
<dc:creator>Autumn A. Cuellar</dc:creator>
<dcq:created>
<dcq:W3CDTF>2001-11-02</dcq:W3CDTF>
</dcq:created>
<dcq:RFC1766>en-uk</dcq:RFC1766>
<dc:description>
The Bibliographic Query Service Element Set Vocabulary is intended to
enhance searches of any document containing biobliographic references.
</dc:description>
</rdf:Description>
<!--BibliographicReference Class-->
<rdf:Property rdf:about="&bqsns;reference">
<rdfs:label>reference</rdfs:label>
<rdfs:comment>
The root class for all BQS bibliographic references.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Bibliographic Identifier Scheme-->
<rdf:Property rdf:about="&bqsns;identifier_scheme">
<rdfs:label>Identifier Scheme</rdfs:label>
<rdfs:comment>
Identifies a cited reference using a database unique identifier.
</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="&dcns;identifier" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Medline Indetifier Scheme-->
<rdf:Property rdf:about="&bqsns;Medline_id">
<rdfs:label>Medline identifier</rdfs:label>
<rdfs:comment>
The Medline database unique identifier.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;identifier_scheme" />
<rdfs:seeAlso rdf:resource="http://medline.cos.com" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--PubMed Indetifier Scheme-->
<rdf:Property rdf:about="&bqsns;PubMed_id">
<rdfs:label>PubMed identifier</rdfs:label>
<rdfs:comment>
The PubMed database unique identifier.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;identifier_scheme" />
<rdfs:seeAlso rdf:resource="http://www4.ncbi.nlm.nih.gov/PubMed/" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--CAS Indetifier Scheme-->
<rdf:Property rdf:about="&bqsns;CAS_id">
<rdfs:label>CAS (Chemical Abstract Service) identifier</rdfs:label>
<rdfs:comment>
The CAS database unique identifier.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;identifier_scheme" />
<rdfs:seeAlso rdf:resource="http://www.cas.org/" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Reference Type-->
<rdf:Property rdf:about="&bqsns;reference_type">
<rdfs:label>Reference Type</rdfs:label>
<rdfs:comment>
Identifies the genre of a cited reference.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Reference Type:Article-->
<rdf:Property rdf:about="&bqsns;Article">
<rdfs:label>Article</rdfs:label>
<rdfs:comment>
The cited reference is an article.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;reference_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Reference Type:JournalArticle-->
<rdf:Property rdf:about="&bqsns;JournalArticle">
<rdfs:label>JournalArticle</rdfs:label>
<rdfs:comment>
The cited reference is a journal article.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;Article" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Reference Type:BookArticle-->
<rdf:Property rdf:about="&bqsns;BookArticle">
<rdfs:label>BookArticle</rdfs:label>
<rdfs:comment>
The cited reference is a book article.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;Article" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Reference Type:Book-->
<rdf:Property rdf:about="&bqsns;Book">
<rdfs:label>Book</rdfs:label>
<rdfs:comment>
The cited reference is a book.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;reference_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Reference Type:Patent-->
<rdf:Property rdf:about="&bqsns;Patent">
<rdfs:label>Patent</rdfs:label>
<rdfs:comment>
The cited reference is a patent.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;reference_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Reference Type:Proceeding-->
<rdf:Property rdf:about="&bqsns;Proceeding">
<rdfs:label>Proceeding</rdfs:label>
<rdfs:comment>
The cited reference is a proceeding.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;reference_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Reference Type:TechReport-->
<rdf:Property rdf:about="&bqsns;TechReport">
<rdfs:label>Technical Report</rdfs:label>
<rdfs:comment>
The cited reference is a technical report.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;reference_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Reference Type:Thesis-->
<rdf:Property rdf:about="&bqsns;Thesis">
<rdfs:label>Thesis</rdfs:label>
<rdfs:comment>
The cited reference is a thesis.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;reference_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Reference Type:WebResource-->
<rdf:Property rdf:about="&bqsns;WebResource">
<rdfs:label>WebResource</rdfs:label>
<rdfs:comment>
The cited reference is a web resource.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;reference_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Provider Type-->
<rdf:Property rdf:about="&bqsns;provider_type">
<rdfs:label>provider type</rdfs:label>
<rdfs:comment>
Who the resource is provided by.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Provider Type:Person-->
<rdf:Property rdf:about="&bqsns;Person">
<rdfs:label>Person</rdfs:label>
<rdfs:comment>
The resource is provided by a person.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;provider_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Provider Type:Organization-->
<rdf:Property rdf:about="&bqsns;Organization">
<rdfs:label>Organization</rdfs:label>
<rdfs:comment>
The resource is provided by an organization.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;provider_type" />
<rdf:seeAlso rdf:resource="&bqsns;Organisation" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Provider Type:Organisation-->
<rdf:Property rdf:about="&bqsns;Organisation">
<rdfs:label>Organisation</rdfs:label>
<rdfs:comment>
The resource is provided by an organisation.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;provider_type" />
<rdf:seeAlso rdf:resource="&bqsns;Organization" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Provider Type:Service-->
<rdf:Property rdf:about="&bqsns;Service">
<rdfs:label>Service</rdfs:label>
<rdfs:comment>
The resource is provided by a service.
</rdfs:comment>
<rdf:type rdf:resource="&bqsns;provider_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Subject Type-->
<rdf:Property rdf:about="&bqsns;subject_type">
<rdfs:label>subject type</rdfs:label>
<rdfs:comment>
Defines the topic of a resource.
</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="&dcns;subject" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Subject Type:Keyword-->
<rdf:Property rdf:about="&bqsns;keyword">
<rdfs:label>keyword</rdfs:label>
<rdfs:comment>
Defines the topic of a resource using keywords.
</rdfs:comment>
<rdfs:type rdf:resource="&dcns;subject_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Subject Type:Subject Heading-->
<rdf:Property rdf:about="&bqsns;subject_heading">
<rdfs:label>subject heading</rdfs:label>
<rdfs:comment>
Defines the topic of a resource using subject headings.
</rdfs:comment>
<rdfs:type rdf:resource="&dcns;subject_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Subject Type:Classification Code-->
<rdf:Property rdf:about="&bqsns;classification_code">
<rdfs:label>classification code</rdfs:label>
<rdfs:comment>
Defines the topic of a resource using classification codes.
</rdfs:comment>
<rdfs:type rdf:resource="&dcns;subject_type" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Entry Status-->
<rdf:Property rdf:about="&bqsns;entry_status">
<rdfs:label>Entry Status</rdfs:label>
<rdfs:comment>
Provides information about the citation, as opposed to the cited
reference.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Subset-->
<rdf:Property rdf:about="&bqsns;subset">
<rdfs:label>Subset</rdfs:label>
<rdfs:comment>
Provides reference subset information.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Property-->
<rdf:Property rdf:about="&bqsns;property">
<rdfs:label>Property</rdfs:label>
<rdfs:comment>
Provides a property about the reference.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Property Type-->
<rdf:Property rdf:about="&bqsns;property_type">
<rdfs:label>Property Type</rdfs:label>
<rdfs:comment>
Declares the property name.
</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="&bqsns;property" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Book:ISBN-->
<rdf:Property rdf:about="&bqsns;isbn">
<rdfs:label>International Standard Book Number</rdfs:label>
<rdfs:comment>
International Standard Book Number unique identifier.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Book (& Article):Volume-->
<rdf:Property rdf:about="&bqsns;volume">
<rdfs:label>Volume</rdfs:label>
<rdfs:comment>
Book or journal volume number.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Book:Edition-->
<rdf:Property rdf:about="&bqsns;edition">
<rdfs:label>Edition</rdfs:label>
<rdfs:comment>
Book edition.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Book:Series-->
<rdf:Property rdf:about="&bqsns;series">
<rdfs:label>Series</rdfs:label>
<rdfs:comment>
The title of the series of which the book is a member.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Book:Editor-->
<rdf:Property rdf:about="&bqsns;editor">
<rdfs:label>Editor</rdfs:label>
<rdfs:comment>
The books's editor.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Article:first_page-->
<rdf:Property rdf:about="&bqsns;first_page">
<rdfs:label>First Page</rdfs:label>
<rdfs:comment>
The first page of the article referenced.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Article:last_page-->
<rdf:Property rdf:about="&bqsns;last_page">
<rdfs:label>Last Page</rdfs:label>
<rdfs:comment>
The last page of the article referenced.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Article:last_page-->
<rdf:Property rdf:about="&bqsns;last_page">
<rdfs:label>Last Page</rdfs:label>
<rdfs:comment>
The last page of the article referenced.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Article:issue-->
<rdf:Property rdf:about="&bqsns;issue">
<rdfs:label>Issue</rdfs:label>
<rdfs:comment>
The issue in which the referenced article is found.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Article:issue_supplement-->
<rdf:Property rdf:about="&bqsns;issue_supplement">
<rdfs:label>Issue Supplement</rdfs:label>
<rdfs:comment>
The issue supplement in which the referenced article is found.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Journal-->
<rdf:Property rdf:about="&bqsns;Journal">
<rdfs:label>Journal</rdfs:label>
<rdfs:comment>
Journal reference.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Journal:ISSN-->
<rdf:Property rdf:about="&bqsns;issn">
<rdfs:label>International Standard Serial Number</rdfs:label>
<rdfs:comment>
International Standard Serial Number unique identifier.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Journal:abbreviation-->
<rdf:Property rdf:about="&bqsns;abbreviation">
<rdfs:label>Abbreviation</rdfs:label>
<rdfs:comment>
Journal abbreviation.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--Journal:abbreviation_scheme-->
<rdf:Property rdf:about="&bqsns;abbreviation_scheme">
<rdfs:label>Abbreviation Scheme</rdfs:label>
<rdfs:comment>
Standard journal abbreviation scheme.
</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="&bqsns;abbreviation" />
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--WebResource:url-->
<rdf:Property rdf:about="&bqsns;url">
<rdfs:label>Uniform Resource Locator</rdfs:label>
<rdfs:comment>
The Uniform Resource Locator that identifies the Web Resource.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--WebResource:estimated size-->
<rdf:Property rdf:about="&bqsns;estimated_size">
<rdfs:label>Estimated Size</rdfs:label>
<rdfs:comment>
The estimated size of the Web Resource.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
<!--WebResource:cost-->
<rdf:Property rdf:about="&bqsns;cost">
<rdfs:label>Cost</rdfs:label>
<rdfs:comment>
The cost of the Web Resource.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="&bqsns;" />
</rdf:Property>
</rdf:RDF>
- Specification Wide
- Many minor editorial changes have been made to all sections of the specification.
- Examples have been updated and expanded where appropriate.
- Section 2.1.2: The Advantages of Using RDF
- New information about the W3C's "SiRPAC" has been included.
- Section 2.1.3: Multiple Methods for Expressing Metadata in RDF
- Section 2.2.1: What is the Dublin Core?
- Section 2.2.2: The Advantages of Using Dublin Core
- Defines the use of the prefixes
dc (for Dublin Core)and dcq (Dublin Core Qualifiers).
- Section 2.3: vCard
- A new section that explains the use of the "vCard" system to give metadata about people. It has been included as the now standard method for this type information.
- Section 2.4: Bibliographic Query Service
- A generalized description of bibliographic referencing in RDF.
- Section 2.5: CellML Metadata
- A new section that describes the use of the
cmeta namespace prefix for all otherwise undefined CellML relevant metadata.
- Section 2.6: Namespaces in CellML Metadata
- With an accompanying table, appropriate namespace URIs and prefixes are given.
- Section 3: Fundamentals
- This section provides a new description of metadata
as it is defined within the an
<rdf:RDF> element.
- Section 3.2: Dublin Core Elements and Qualifiers
- A new table (Table 2) is provided giving suitable Dublin Core Metadata elements and their respective qualifiers.
- Section 4.5: Creation Date
<dcq:creation> & <dcq:w3CDTF> now replace <dc:date> with the value "created", <dcq:dateType> and <dcq:dateScheme>.
- Section 4.6: Modified Date
<dcq:modified> replaces the <dcq:dateType> with the value of "modified".
- Section 4.7: Alternative Names
<dcq:alternative> replaces <dcq:titleType> with the value of "alternative".
- Section 4.9: Sex
- The addition of the controlled vocabulary "other" and "all"
has been made.
- Section 4.10: Biological Entity
- Alternative biological entity names are now
described using the
<dcq:alternative> element within <cmeta:bio_entity> element. This replaces the previous <dc:title> qualified by a <dcq:titleType> with the value "alternative". - The following encoding schemes have now been added to those
previously defined: GO Consortium (Gene Ontology controlled vocabulary), OMIM (Online Mendelian Inheritance in Man catalog of human genes and genetic disorders), LocusLink (LocusLink Genetic Loci database), and Unigene (GenBank non-redundant gene clusters database).
- Figure 20 now includes the use of the
<rdfs:label> element (an alternative to the <dc:title> element).
- Section 4.11: Mathematical Problem Type
<dcq:abstract> or <dcq:tableOfContents> replaces the previous <dc:description> that was qualified by <dcq:descriptionType>.
- Section 4.12: Description
<dcq:modified> replaces the <dcq:dateType> with the value of "modified".
- Section 4.13: Annotations
<cmeta:comment>, <cmeta:limitation>, <cmeta:modification> & <cmeta:validation> are now recommended instead of
<cmeta:annotation> with the <cmeta:annotation_type> qualifier.
- Section 5: Citations
- A new comprehensive section on citations has been added.
- Section 5.2.1: The identifier attribute
- The database elements
<bqs:medline_id>, <bqs:PubMed_id> & <bqs:CAS_id> replaces the need for the <dc:identifier_scheme> element to be used with the value of the database.
- Section 5.2.2: The cross_references attribute
<bqs:alternative> element can
provide and alternative identifier and replaces the <dc:identifier> and <bqs:identifier_type> combination.
- Section 5.2.3: The type attribute
<bqs:JournalArticle> replaces
<bqs:reference_type>.
- Section 5.2.6: The language attribute
- It is recommended that the RFC1766 encoding scheme is used to define the language of the cited resource. The
<dc:RFC1766> element replaces <dcq:language>.
- Section 5.2.7: The format attribute
<dcq:medium> element qualified by <dcq:IMT> is recommended to describe the cited resource, replacing <dc:format>.
- Section 5.2.8: The date attribute
- Updated to embrace the W3C-DTF format.
<dcq:issued> qualified by <dcq:W3CDTF> replaces the <dc:date> element.
- Section 5.4: The
<BibRefSubject> class
- Keywords:
<bqs:keywords> replaces <bqs:subject_type> value = keyword. - Subheadings:
<bqs:subject_heading> with <dcq:LCSH> or <dcq:MESH> replace <bqs:subject_type>, value = subject heading and
<dcq:subjectscheme> value = LCSH or UDC. - Codes:
<bqs:classification_code> with <dcq:DDC> or <dcq:UDC> replaces <bqs:subject_type> value=classification_code with <dcq:subjectScheme> with value = DDC or LCC.
- Section 5.5: The BibRefDescription class
- The
<dcq:abstract> &
<dcq:tableOfContents> elements replace <dcq:descriptiontype> with the values of abstract or tableofcontents. - Abstract_type and toc_type can be serilized with
<dcq:IMT> instead of the previous <dcq:format>. - Similarly the
<dcq:IMT> element replaces <dc:format> when used if the abstract of table of contents is supplied by a URI.
- Section 5.7: The EntryStatus class
- Information about the modification date of a citation is now given by the
<dcq:modified> element replacing the <dc:date> element.
- Section 5.10.1: The Book subclass
- The editor subclass element
<bqs:editor>
replaces the <dc:contributor> qualified by <bqs:contributor_type> with value = editor.
- Section 5.10.2: The Article subclass and its subclasses
- The from_book attribute is now
<bqs:book> instead of the <bqs:reference> with the type book.
- Appendices
- Two new appendices "Cmeta Terms RDF SChema Draft" and "BQS Terms RDF Schema Draft" have been added.
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