Cellml.org - Meeting Minutes 03 February 2004

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Meeting Minutes 03 February 2004

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Author:
          Autumn Cuellar (Bioengineering Institute, University of Auckland)
Collaborators:
          Shane Blackett (Bioengineering Institute, University of Auckland)
          David Bullivant (Bioengineering Institute, University of Auckland)
          Catherine Lloyd (Bioengineering Institute, University of Auckland)
          Poul Nielsen (Bioengineering Institute, University of Auckland)
          David Nickerson (Bioengineering Institute, University of Auckland)

Catherine's update:
- Has been in communication with Alan about COR, helping him with debugging because it can't solve some of the models up on the wbesite. COR is free for Academic use and hopefully the source code will be available. It does look pretty.
- The “CellML: it's future, present and past” paper has been accepted for publication.
- Has finished up document explaining how she writes models for the website (see the Best Practice document).
- Changed all the variable names in the CellML models to be valid 1.1. Most of them were 1st_ and 2nd_s, changed to firsts_ and second_s.
- Four weeks left until she leaves for her PhD.
Shane's update: Vijay's made CellML work in CM so that he can use CellML to describe his finite elasticity problems. Previously it would solve ODEs, but Vijay didn't need an iterative routine for the constitutive laws. The problem is that CM still thinks it's a cell model, Vijay is just fooling it into only running it once.
Poul's update: Still working on Road Map. He hopes to have it ready for us to look at next week. Brought up shifting the meeting time. Lots of arguments, eventually rejected proposal.
Autumn's update: I've decided not to use Apache Forrest to run the website. Warren's makefiles are more suited to our use. Will just change documentation to DocBook for the time being.
Matt's update: Still working on the anatomy ontology web interface.