Workshop Programme
The following is the initial programme for the 2011 CellML Workshop. It is subject to subtle modifications. All sessions are located in the fifth floor seminar room at the Auckland Bioengineering Institute, 70 Symonds Street, Auckland. For attendees who are not members of the ABI, you will need to first proceed to the reception on the sixth floor in order to gain entry to the fifth floor.
Monday 11th April
09:00 - 10:30 CellML Project Updates
- Welcome and overview (Poul Nielsen)
- Role of CellML in collaborations (Peter Hunter)
- ABI software and standards update (Randall Britten)
10:30 - 11:00 Morning tea
11:00 - 12:30 Multiscale modelling
- FieldML update (Richard Christie)
- OpenCMISS (Chris Bradley)
- CellML with CMISS and OpenCMISS (David Nickerson)
- Modelling calcium dynamics within the cardiac cell (Vijay Rajagopal)
12:30 - 13:30 Lunch
13:30 - 15:00 Metadata
- SBO and MIRIAM annotations and potential use for CellML-SBML conversion (Lukas Endler)
- CellML metadata - current status and future plans (Mike Cooling)
15:00 - 15:30 Afternoon tea
15:30 - 17:00 CellML metadata discussion session
- Discussion and roadmap specification
18:00 Dinner at Vivace Restaurant & Bar
Tuesday 12th April
09:00 - 10:30 Software
- The CellML API (Andrew Miller)
- OpenCOR (Alan Garny)
- Extending libSedML to support CellML models (David Nickerson)
10:30 - 11:00 Morning tea
11:00 - 12:30 Model Repositories
- Combining systems biology and pharmacokinetics - drug cardiotoxicity assessment (Sebastian Polak)
- BioModels.net (Lukas Endler)
- PMR2 (Tommy Yu)
- Curating hepatology models (Harvey Ho and Hanne Nielsen)
- [TBC: The JUMMP project]
12:30 - 13:30 Lunch
13:30 - 15:00 The future of CellML
- Discussion of proposals for CellML 1.2 and beyond
- Overview of existing proposals
- New proposals
15:00 - 15:30 Afternoon tea
15:30 - 17:00 The future of CellML
- Discussion and roadmap specification
